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Search below to delve into the Bitesize Bio archive. Here, you’ll find over two decades of the best articles, live events, podcasts, and resources, created by real experts and passionate mentors, to help you improve as a bioscientist. Whether you’re looking to learn something new or dig deep into a topic, you’ll find trustworthy, human-crafted content that’s ready to inspire and guide you.
The humble plasmid. We now know it so well, but as little as 60 years ago the field of extra-chromosomal heredity was decidedly murky. Not only was it the subject of great debate, conflict and friction within the scientific community, it was even used as a politico-religious tool during the Cold War! The origin of…
If you’re performing DNA/RNA precipitations, you will have read Suzanne’s excellent article on which alcohol to use for precipitating your precious samples (check out some useful info in the comments for that article as well). Its publication prompted the recall of a useful tip I learned from a post-doc many years ago, one of those…
There’s something in the water, and it would love to go after your experiments. Straight out of the tap, water contains microorganisms, endotoxins, DNase and RNase, salts and other impurities that could gobble up your experiment in one bite. Of course we avoid this drama completely by using purified water from which these nasties have…
Working at a plasmid repository, I get a lot of feedback from scientists who are relieved we exist simply because that means they don’t have to request a plasmid directly from another academic lab. Either they’ve had a bad experience making requests in the past, or they really don’t know how to go about doing…
The fourth Thursday of November marks the annual tradition in the U.S. called Thanksgiving. Originally, Thanksgiving was a religious holiday that has sinced turned secular and became a national holiday in 1941. Now, for families celebrating Thanskgiving, it is a time to cook a whole lot of food and eat way too much pumpkin pie….
How often do you make errors in the lab that ruin a good experiment? Rather than flaws in experimental design, I mean errors like forgetting to add a reagent, pipetting the wrong amount, or following a protocol step wrongly. Especially early on in your career, errors like this can be a real drain on your…
TAE or TBE, which is best? Well, of course, it depends on what you want to do. Here are the pros and cons of both: But you might be better of using neither of these buffers. Despite the fact that they have been firmly established as the most popular buffers for DNA electrophoresis since their…
My PhD was a soul-less affair. It was also rock-less, jazz-less and pop-less. And all because my supervisor was of the opinion that music in the lab was a distraction that reduced concentration and our ability to do the job. “Rubbish!”, I thought, “Nothing helps you through a mindless task like splitting cells, pipetting or…
In a previous article, I listed some ways that people annoy their co-workers and many of you added some of your own pet peeves. Now I would like to discuss some ways to be the lab favorite, also known as the “golden child”. Does your lab have a “golden child”? Someone who is always perfect,…
One of the great features of PCR is its excellent sensitivity as we know. And many articles describe real-time qPCR as an added leap forward in that sensitivity – to the point where it has become a standard feature of a new assay description Indeed, I’m currently developing a new qPCR assay to replace a…
If you’re like many researchers, problems with PCR amplifying high GC DNA templates will be a major annoyance for you. Many strategies developed to overcome this issue. Betaine is the most common PCR additive used to enhance amplification of GC rich sequences because of its ability to dissolve secondary structure that blocks polymerase action. But…
You youngsters don’t know how easy you’ve got it. Kits, outsourcing and improved practices are making research easier and easier. At least in theory (who are we kidding?). In the old days things were much tougher, and many wiley old scientists bear the scars, mental and physical, of carrying out techniques that were mind numbing,…
Designing effective qpcr primers is essential for successful qPCR experiments, yet it can be challenging. Many validated primers are available through commercial databases like Qiagen’s GeneGlobe and Applied Biosystems’ TaqMan assays. Alternative public databases also offer primers, mainly for human and mouse genes. When primers are unavailable, literature searches or custom design remain necessary. Using pre-designed qpcr primers can save time and improve assay efficiency, making them valuable resources for bioscience researchers.
It’s the molecular biologist’s version of ‘I have good news. . and bad news’. The good news is that I amplified the DNA band of interest. The bad news is that I amplified these other bands as well! Oh, and this smear. What to do? Typically you might try and cut out the band of…
Hydrolysis probes are a widely used chemistry in RT-qPCR for sequence-specific detection through probe hydrolysis and fluorescence increase. Compared to PlexorTM, they offer equivalent signal specificity but lack melt curve analysis. PlexorTM provides easier optimization and direct signal measurement, while hydrolysis probes require careful probe and primer design for accurate results.
After Peter’s Introduction to Linux, those of you brave enough to accept the challenge will now have Linux installed on your machine so today I want to highlight to you some of the wonderful free software that is available for biologists using Linux. Before I start, I should mention that virtually all tools of modern…
This article provides a clear comparison of Plexor and SYBR chemistries used in qPCR. Key differences include signal specificity, PCR inhibition, melt curve analysis, and multiplexing capabilities. Plexor offers greater specificity and multiplexing potential, while SYBR Green is simpler but prone to non-specific signals and PCR inhibition. The article also discusses some limitations unique to Plexor. Overall, Plexor and SYBR compared highlight practical considerations for selecting qPCR detection methods.
A couple of weeks ago, Nick tried to convince us that we should all be using Macs. But why would you want to use a Mac (or a PC) when you could have an operating system that: That operating system is Linux. And I think that it is high time that more bioscientists got to…
Plexor offers a unique qPCR method that measures decreasing fluorescence during amplification, simplifying assay design and enabling melt curve analysis without probes or dyes. It uses modified nucleotides and reversible quenching for sensitive DNA and RNA quantification, supported by free primer design and data analysis software compatible with common qPCR instruments.
Most people that do scientific research for a living seem to have mixed feelings about their job. Many that I know are routinely day dreaming of quitting. This contrasts with the well-established, romantic image of the dedicated scientist who loves his/her work above anything else. So what is the real story? Do scientists really like,…
So you finally got your PhD (or your masters or batchelor’s) and you are making the big switch to a small biotech company. You will probably have been hired for the specific skill set that you have built during your training, but now you have to learn to apply those skills to solve real world,…
So you have some blood stored in the -20 °C or -80 °C and you want to isolate RNA from the samples. If you wanted DNA, you would have many products to choose from. But for RNA, your choices are more limited. Obtaining RNA From Frozen Blood is Difficult Why is that? The reason is that most…
The following question was emailed to Bitesize Bio by Beheroze Sattha and I gladly took up the challenge, and I immediately knew the answer. Or so I thought. After delving extensively into Pubmed, Genes V (I know, I need a new version) and Molecular Cloning I have come up with an answer, but it is…
If you ask any finished graduate student, most of us starting a Masters or PhD program were very excited at what awaited us and if you were anything like me, you were foolishly idealistic and thought you were going to pull on a lab coat, cure cancer and save the world. Ok, maybe most people…
Criticism is not just valuable, it is essential for a person’s development as a scientist, or anything else for that matter. Well that’s not entirely true. Not all criticism is valuable, it has to be the right kind of criticism. It has to be constructive and better still, well delivered in order to inspire the…
Thanks to Bitesize Bio reader, Muthu Arumugam for contacting us about some problems he has been having with restriction digestion and clean up of DNA. I have boiled his query down to four main questions that are pertinent for most molecular biologists, so I hope that Muthu and everyone else can learn something from my…
In response to my last article, The Taq behind PCR, one of our readers, Bonnie Barrilleaux, asked whether DNA could naturally survive at temperatures that would denature it. It also begged the question; how do proteins stay intact and functioning at these high (55°C and up) temperatures? It turns out, cells do a lot of…
It seems there is a reality TV show for virtually every type of person or profession. From Alaska king crab fishermen to surviving the outdoors to living the life of a privileged housewife, you name it and there is a show about it. So why not a show on the challenges and antics of people…
Rushing and overloading yourself in science is common, even normal. Surprisingly it is considered as an admirable aspect of “scientific flair” in some quarters. And the sad fact is that it is an ingrained part of the scientific landscape. But is this the best way to do things? Should you allow yourself to succumb and…
Gel extraction — what could be easier? Now we have quick and easy gel extraction kits, we no longer need to use time-consuming old fashioned methods like electro-elution or “freeze and squeeze”. Thank goodness. When Gel Extraction Goes Wrong But even the simplest of procedures can go wrong. Maybe you were distracted, confused, or thought…
Controls are obviously extremely important when setting up experiments. Without them, a meaningful interpretation of the experimental results would be impossible. I say obviously, but in my previous job as a technical services scientist, you’d be surprised at how often I found myself talking to customers about the importance of controls. One customer commented, during…
The reverse transcription (RT) step of RT-PCR for converting RNA to cDNA is critical for accuracy in quantification and for finding low copy messages. Thus, you want to make sure that this step is performed with the highest efficiency but without having to optimize every single step. To help you further in optimizing the RT…
Really great presentation skills. Some people in science seem to have them, and some don’t. I am one of the don’ts. Sure, I can get up in front of people and talk when needed, but it won’t be a polished performance by any means. I can get my message across but my delivery is not…
Keeping safe in the lab really only requires one thing: common sense. But if you look at what people are doing in the lab, you might think that common sense isn’t so common after all. What are the most stupid things you have seen people do in the lab to put the safety of themselves…
Nobel Laureate Kary Mullis is generally credited with inventing the polymerase chain reaction, but his discovery owes a lot to a microbiologist who loved to travel, some refuted assumptions of what can live in hot springs, and a now-closed field station in Yellowstone National Park.Here’s the story. In the 1960s, Thomas Brock was a biologist…
Removing unwanted DNA from vectors is one of the most routine laboratory techniques in cloning. Check out our top tips.
No matter how many times you look at it, it’s not going to change. You are planning your next cloning experiment, but there’s a problem. The only restriction enzyme that cuts in a suitable position on your plasmid vector also, as luck would have it, cuts in another position elsewhere in the vector so you…
As well as having had some negative work experiences, I’ve also had the pleasure of working with some wonderful people, including some of my previous bosses. Life is too short to deal with some of the idiosyncrasies described in Suzanne’s previous article on bad bosses.So let’s balance the scale and look at what it takes…
Now that you know who you are trying to impress with your resume, it’s time to focus on how it looks and reads. Remember,.this is NOT the venue to display your creativity. They key is to keep it simple and clear. Follow a simple format that is easy to read – remember that your audience…
Going to conferences normally involves a significant investment of time and money. So it’s important to get as much as you can out of them. One of the most valuable things you can get from a conference is contacts. These can build into a network of people that will be valuable to you throughout your…
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