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Arguably, molecular biology is impossible without microbiology—even if you work exclusively with transgenic mice, you may one day need to amplify a vector in E. coli. And microbiology is definitely impossible without good aseptic technique. The main principle of good microbiological practice is a zero tolerance approach: it’s good to be a little paranoid about…
Think before you start! Before you even start preparing your samples, you should think about the choice of microscope for image acquisition. Manufacturers offer an ever increasing range of light microscopes- some of which may already be available in your research institutes. To help you get the best out of your imaging experiment by making the…
Don’t be left in the dark! Navigating through the sea of parameters that can aid or abet successful microscopy can perhaps seem daunting. It may be tempting to assume you can just sit down at a microscope, look at your sample, and obtain beautiful images simply by hoping for the best. However, even a basic…
Much more than just an archive, The Cell: An Image Library-CCDB (Cell Centered Database; ‘The Cell’) serves many additional purposes. Whilst many researchers use The Cell to organize their own images for research and archival purposes- the real value of The Cell is the ability to share those images with other researchers. In many scientific…
Protein tags are invaluable tools for the modern biologist, particularly if you work on one of the 99% of proteins for which there isn’t a nice antibody readily available. If you want to purify large amounts of your protein of interest, detect it by western blot or fluorescence microscopy, or identify its potential binding partners,…
Next Generation DNA Sequencing (NGS) is a revolutionary new technology that provides biologists and medical scientists with the ability to collect massive amounts of DNA sequence data both rapidly and cheaply. This technology is having a huge impact on many aspects of biology and medicine because it can be applied in so many different ways….
It’s unclear exactly how the term ‘Special Stains’ first arose in the world of histology, but it refers to empirical and histochemical staining techniques that significantly contributed to the advancement of histology in the late 19th century. In a nutshell, these stains are ‘Special’ because they are not routine – simple as that. Therefore, Special…
Rumour has it that many people who work in a lab enjoy cooking. And, when asked by a non-biologist family member how they spend their days in the laboratory, molecular biologists might answer that doing experiments is similar to cooking. Apart from the organisational parallels that can be drawn between following a protocol and a…
Mycoplasmas are the most difficult-to-detect organisms in your eukaryotic cell culture. And they can be the most dangerous; they can disrupt cell growth and differentiation and even apoptotic patterns without you even knowing what’s going on until it’s too late. Traditional cell culture methods can take up to a month to yield results, which means…
In a typical biology lab, you may encounter many types of biological materials, including cells, bodily fluids, purified DNA and RNA, enzymes, bacterial cultures, body parts, and whole animals. In order to perform experiments that yield quality results, samples need to be stored properly in order to preserve their activity or integrity. Beginning students and…
You’ve spent days, perhaps weeks or months squirrelling away tubes of preserved tissue in the dark drawers under your laboratory bench like the trophies of a demented serial-killer. Hours have been spent in histology in the processing, embedding and sectioning onto slides. Finally, like a warrior victorious in battle, you hold aloft your thin glass…
Here, we share a protocol for a midiprep, which, if not faster, gives a larger plasmid DNA yield than any commercial midiprep kit.
Summertime… The birds are singing, the trees are growing. Your tissue culture has sprouted yeast contamination, your yeast culture is happily growing bacteria. Your bacterial culture was growing calmly and predictably, dividing every twenty minutes, but suddenly its optical density has dropped, and it’s full of some sort of filaments and clumps. Or you did…
Before using any Biological Safety Cabinet (BSC) for the first time, have a person with working knowledge of the machine give you an overview of how to use the cabinet. Different labs have different protocols in regards to running the cabinet, disinfecting the cabinet, determining which pathogens that may be used in the cabinet and…
The last step in western blotting is imaging the blot – this is the moment of truth, when you finally get to see the results of the experiment you’ve been working on for so long! There are a variety of different ways to image your blot. The method you choose will largely depend on the…
As we learned in my previous article, cell culture hoods have many names. As if that wasn’t enough, they are all-too-often misunderstood and mistreated, which can lead to dangerous situations harmful for both the worker and the general lab environment. Here are three common ways that workers abuse biological safety cabinets; make sure you don’t…
Biological safety cabinets, laminar flow hoods, clean hoods and culture hoods are all common names for those essential pieces of equipment that you use in cell culturing. The terms are used inter-changeably, but in fact there are lots of different types of culture hoods, each of which does a different job. Knowing which is which…
Most scientists I know approach the publication process with fear and trembling: the endless discussions about what journal to submit to, the agonized consideration of impact factors, comparing the all-important “time to first decision”, etc. Now that I’ve been working for a scientific publisher for a few months, I’m surprised at how many manuscripts still…
The first step in most Western blotting experiments is lysing your cells to extract protein. You need to break open your cells in order to be able to isolate the proteins, and you need to do this with the least degradation and the most reproducibility possible. Depending on what your starting material is, there are…
For scientists, Photoshop is a double-edged sword with a dagger nailed to the hilt. Its power in image processing is unrivalled; its ability to gut you with ethics violations is unmatched. An earlier article outlined how to keep your conscience clean when Photoshopping, here we offer four tips that will help walk with the Photoshop balancing…
There are several yeast transformation protocols around, and most of them require a lot of steps: overnight starter culture, dilution and growth to logarithmic phase, several washes, and so on… These protocols work very well since they have been optimised for maximum transformation efficiency, which is needed for applications like library construction. But they are…
Like many scientists, I don’t consider myself a statistics expert. But I am determined to do things right in my science, and that includes statistics. In my experience, a lot of scientists who are “scared” of statistics fall into the trap of ignoring the existence of anything beyond a t-test. But using the right method…
What comes to mind when you think of good laboratory practices? To many, good laboratory practices describes the best conduct while working at the bench. The laboratory is a complex environment and understanding how small, seemingly innocuous, actions can have such a huge impact on the outcome of an experiment will help you to ensure…
Proteases: wild, mysterious, destructive. What are these untamed elements ravaging your precious lysate? How can a drop of EDTA or a smidge of “cocktail” protect that sample, which is gently cradling your hopes, your dreams, and your desire to survive the next lab meeting? Brace yourself for a biochem flashback: in this article, we’ll explain…
The very idea of standing up and giving an oral presentation at a conference gives even the most confident of us butterflies. Additionally, I don’t know many scientists who find the thought of spending hours working on a powerpoint presentation exactly thrilling. However, there are many benefits to presenting your work at a conference. First…
After having discussed what epigenetic mechanisms are and how we’ve learnt about what they do, it is now time to look into how epigenetics affect our lives if things do not go the way they are supposed to go. I hope I have convinced you that epigenetic processes are vital for an organism, in development…
Epigenetics is the most rapidly expanding field in biology. In the second article in this series, I discussed which experimental techniques have been crucial in gaining insight into epigenetic processes. I will now shed light on what those and other methods have taught us. As described in the first article, it has been long understood…
In the past decade, important advances have been made in the field of epigenetics. Obviously, unraveling epigenetic mechanisms has been greatly facilitated by technological developments. I’ll try to give you an impression of the types of experiments that have helped fuel those new and exciting insights. Yevgeniy Grigoryev has recently written an article on DNA…
These days, epigenetics is a fast moving field. I don’t remember having learnt about it during my biomedical studies, some 10 years ago. Nowadays, there seems to be no way around it when studying health and disease. Increasing interest combined with recent technological breakthroughs have led to quickly expanding knowledge of its abundant and important…
I first read “The Golem: What You Should Know about Science” as an undergraduate student for an introduction to the sociology of scientific knowledge. I feel it’s an important book for anyone who wants to understand how science works. Ten years later, I still find myself revisiting it. Read on to find out why… In…
A young laboratory technician was puzzled by his plates when he pulled them out of the warm room. They never looked that cloudy and fuzzy before. He brought them to his lab director, who shook her head sadly; together, they threw the plates away. Does this story sound familiar? What probably happened was an all-too…
Mycoplasma infections are very, very bad news; these special prokaryotes can rapidly spread through your cell culture and inhibit cell proliferation, induce apoptosis, cytokines and radicals, and otherwise transform your cells. Worst of all, since contamination is not easy to spot, you may not realize your culture is contaminated until it’s too late. The 100…
How often have you torn apart the lab looking for the reagent you need right now for some thawing samples? That reagent which you (possibly) ordered a week ago and which (maybe) came in yesterday? If your answer isn’t “just once in my entire career,” please read on! I will outline four steps to setup…
Commercial kits for isolation of large quantities of plasmid DNA generally rely on standard alkaline lysis followed by an affinity chromatography column-based method to purify DNA. Compared to traditional cesium chloride banding or PEG precipitation of plasmid DNA they are a breeze, and have the added benefit of avoiding use of toxic or hazardous chemicals…
Western blots may be great for visualizing protein expression, but they can be a perfect way to waste your precious antibody stocks if you follow the normal protocol. Thankfully, you don’t have to follow the normal protocol any more; here’s how to get great blots with a fraction of the antibody usage. I have tried…
It’s pretty likely you’ll have heard of impact factors, either through colleagues talking about them in the lab, or from a journal homepage advertising its latest score. Whilst impact factor is a relatively artificial value, it is something that journal editors, scientists and some funding agencies take seriously. It’s therefore important to understand what it…
Graduate programs in science can take an additional four to seven years beyond a Bachelor’s degree. That’s a lot of time to commit to advanced training! If you’re currently a high school or college student wondering if graduate school is the right path for you, perhaps an internship in a laboratory can help you decide….
You’ve masterfully run and transferred your gel, and now it’s time to probe and quantify your protein(s). You’ve got your antibodies and ECL ready to go. Substrate – check. Film cartridge – check. Darkroom – ah yes, that magical place where night vision goggles are required to navigate a veritable minefield of potential chaos. It…
Following closely on the heels of Cristy’s article “How to Clean a Waterbath”, I’d like to take a moment to rant about a few other hated (and carefully avoided) lab tasks. Here are my top ten LEAST favorite things to do in the lab: What’s YOUR most hated lab task?
Poster sessions can be your best friend, or your worst nightmare; it all comes down to how well you’ve prepared. In this article, I’ll discuss how to present your data in poster form, what to look out for at a poster session, and how to make the most out of a poster session…in short, how…
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