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Khushbu Patel

Khushbu gained a Master of Science in Bioinformatics from the Georgia Institute of Technology

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Articles by Khushbu Patel

reference genome

Get to Know Your Reference Genome (GRCh37 vs GRCh38)

By Khushbu Patel | April 4, 2018

Whether your experiment relies upon a reference-based genome assembly or mapping reads to a reference genome to identify variants, you need to choose a human reference genome assembly. But wait! You go to the FTP site of NCBI’s refseq and click on the Homo sapiens folder. There you are presented with two choices. Which one…

How to Use CellProfiler for Cell Imaging

By Khushbu Patel | June 22, 2017

Are you trying to figure out how to calculate intensities of fluorescently-labeled single cells? Do you have cells at high densities or present in clusters? Are you worried that your current cell imaging analysis software is unable to mark clear boundaries around each cell in a cell cluster? Don’t fear, because CellProfiler 2.1 is here to…

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