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Gareth McCathie

Gareth gained a PhD in Biomedical Science from the University of Sheffield. He is currently Principal Scientist (Computer Aided Biology) at Oxford Biomedica.

Institution : Oxford Biomedica
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Articles by Gareth McCathie

How to Start Using Coding to Automate Image Analysis Part 1: The Simple Process

By Gareth McCathie | July 9, 2016

Pat yourself on the back, you saw a post with the word “coding” in the title and you didn’t freak out or glaze over. That’s the first step. Coding seems to have such a stigma attached to it; people tend to think that it’s incomprehensible nonsense that they could never learn, and that it has…

How to Start Using Coding to Automate Image Analysis Part 2: Batch Processing Multiple Images

How to Start Using Coding to Automate Image Analysis Part 2: Batch Processing Multiple Images

By Gareth McCathie | July 9, 2016

In Part 1 of this article, I introduced you to using code for basic image manipulation in ImageJ and working with the command recorder to expand your coding vocabulary. I covered how to make a simple macro, how to edit it and then save it to be run again another time. If you skipped the…

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