TAE or TBE, which is best? Well, of course, it depends on what you want to do. Here are the pros and cons of both: TBE (Tris-borate-EDTA) is a better conductive medium than TAE (Tris-acetate EDTA) so is less prone to overheating so use TBE for long runs Borate is an enzyme inhibitor so TBE [...]