Spare a Thought for the Old Scientists |
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Nick Oswald |
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You youngsters don’t know how easy you’ve got it. Kits, outsourcing and improved practices are making research easier and easier. At least in theory (who are we kidding?).
In the old days things were much tougher, and many wiley old scientists bear the scars, mental and physical, of carrying out techniques that were mind numbing, frustrating or just plain dangerous. Now the Bitesize Bio team is (generally) not THAT old – or so we tell ourselves – but we put our heads together and to think of the techniques we are most glad we don’t have to use anymore. And, together with a some suggestions from our Twitter followers, we came up with a top 10 .
Please feel free to share your own, especially if you are a REALLY old scientist and remember some of the especially nasty stuff!
1. DNA sequencing. In the old days DNA sequencing meant pouring massive gels, slopping around up to your armpits in P-32 phosphorus and reading the sequence by hand from the gel. We much prefer the “stick a tube in an envelope and send it off to the sequencing service” approach.
2. Making Oligos. Another revolution. Sending the sequence off to the oligo synthesis service is so much better than spending an eternity to (attempt to) make them yourself.
3. Phenol-chloroform extractions. No more smelly phenol in our labs, we’ve got spin columns (Thanks @Kyrsten_Jensen for this suggestion)
4. Packing protein purification columns. Buying them pre-made is so much easier (Thanks @Kyrsten_Jensen for this suggestion)
5. Electrophoresis with home-made electrophoresis apparatus. Electrifying! (although our home-made gel visualisation apparatus is pretty good!)
6. Northen Blots. Thank you bioinformatics.
7. Drying Agarose gels/SDS-PAGE gels for archiving. Thank you digital photography! (thanks @saxphile for this suggestion)
8. Adding mineral oil to PCR. Whoever invented heated lids in PCR machines was a genius (thanks @saxphile for this suggestion)
9. Home made minipreps. I may not have been the greenest-fingered scientist that ever lived but the failure rate of my home-made minipreps was pretty big, especially when I did many of them at one. Thank goodness for miniprep kits.
10. Pouring your own SDS-PAGE gels. This one, and I suppose many of the others above that advocate buying pre-made stuff, is controversial but in my experience is very cost-effective to buy in pre-made SDS-PAGE gels rather than pour your own. No wasted time on leaking gel apparatus or forgetting to add the Temed and the gels are nice and uniform.
So that’s we don’t miss doing in the lab. How about you?
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Carl Schmidt
Don’t forget Maxim and Gilbert chemical sequencing method– rocket fuel, mutagens, meter long polyacrylamide gels and massive amounts of 32P.
Guy Plunkett III
mouth pipetting, in all its various forms
Suzanne
Large scale plasmid preps: add way too much ethidum bromide, then centrifuge overnight and use a needle to extract it through a plastic tube while holding it over UV light. Twice!
Sequencing: how about sitting over a light box reading the film by eye and writing down each base. Then you have to enter all the sequences into the computer yourself. I did this for about 50,000 bases of sequence.
Niles
6. Northen Blots.
Heh – your eukaryotic bias is showing
Northerns are still probably the easiest and fastest way to determine the structure of an operon in bacteria as well as other transcriptional oddities. RT-PCR, while very useful, tends to leave out a ton of data when employed for such uses.
Christopher
As a scientist who ran tons of SDS PAGE gels for protein work. I used both digital imaging, and dried the gels down for archiving. Digital archiving is not a solution at all. What happens if the digital information gets lost/corrupted etc? Also, in my opinion, many cameras are still not sensitive enough to pick up the bands which are very faint. Or they do, but not very well. I have been imagining gels since 1993, and nothing beats the real thing in front of you. As for pre-made gels..Like anything in life that is sold as a convenience item, I can’t believe it is cheaper than pouring your own. I have used them. I feel they are best used for that FINAL figure, especially for a gradient gels. For regular use, I’d make students do it the “real” way
Eric
For one of my classes, my professor talked about the old-school isoelectric protein electrophoresis setup they used for a paper: Whatman paper soaked in buffer as the electrophoresis surface, the ends dipped into pools of buffer, and an extremely high voltage put across the two pools. The whole thing was immersed in kerosene for electrical insulation.
Stan
Some things are lost arts…
developing xray films in developer tanks
mastering polaroid film exposures
enzyme kinetic assays (no computers!)
ligand binding assays on millipore filters
garbage pail scale protein purification
slide rule calculations
35 mm slides (how to correct orientation fast!)
lantern slides (for you oldies)
How’s that for a starting list?
Stan
forgot to add:
mouth pipeting
glass lambda pipets (sets were guarded with one’s life; I always marveled how beautifully they were made)
Jean-Etienne
Don’t forget drawing graphs by hand, idem for slides, and giving them to a photographer in order to get white-on-blue 35mm slides
Data collection and statistics also relied on hand, pen and paper at that time …
Nick
Thanks all for these great contributions.
Christopher — I agree that cameras aren’t the greatest at picking up faint bands, but regular backups would avoid the corruption problem, wouldn’t they?
I’d definitely make students make their own gels (:)) at least so they know how to do so. But for getting the job done I far prefer the pre-made ones, although they are more expensive so they are a bit of a luxury. Having said that though, it sounds like you run many many more gels than I ever did so perhaps at your level of use the cost of the pre-made versions would become astronomical.
Alejandro Montenegro-Montero
@Stan
developing xray films in developer tanks
I still do that sometimes! lol
s_laub
extracting your own restriction enzymes
Tolga
Yeah, those old days must have really been dangerous..to the extent that most of those old-time scientist probably did not survive, and those in the minority who did survive could get their independent/real positions before their 30s, compared to us today: safe and comfortable, still grad students/postdocs at mid/late 30s
Here’s another one: periodic visits to the library to xerox papers from journals.
Natalie
Everyone is accessing research articles directly from the lab computer nowadays: no more trips to the library to make photocopies! Searching through MEDLINE on a CD-ROM was also a bad experience. I tell you, grads have it easy these days. And pouring these sequencing gels was REALLY a pain in the behind.